PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G322100.2.p
Common NameGLYMA_13G322100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 316aa    MW: 35315.4 Da    PI: 4.6466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G322100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-11138181755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + ErrRR r+++++  Lr+l+P+      +K++Ka+i   Av Y+++Lq
  Glyma.13G322100.2.p 138 ISERRRRGRMKEKLYALRSLVPNI-----TKMDKASIIGDAVSYVHDLQ 181
                          78*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.586131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-17132204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16133196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-13133185No hitNo description
SMARTSM003531.1E-14137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8137181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDVHEDTLKY MNDFELYDFV ADSNFDQFIN LIRGENEDAN CDHFGSDLIN DCFVNNQQQP  60
LSSPANPFDQ NNNNNNNDAV NVYDPSSTFS SFSCFDGELK GEGEEENDGE HSSGTTTTTT  120
KNADGKLKLK TDRSKTLISE RRRRGRMKEK LYALRSLVPN ITKMDKASII GDAVSYVHDL  180
QAQARKLKAE VAGLEASLLV SENYQGSINN PKNVQVMARN ISHPNCKKIM QVDMFQVEER  240
GYLAKIVCNK GEGVAASLYR ALESLAGFNV QNSNLATVGE SFLLTFTLNV SCPLSFPIQS  300
FYTVEMSYYD FCLWI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G322100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541980.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLI1M4G50.0I1M4G5_SOYBN; Uncharacterized protein
STRINGGLYMA13G39650.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.15e-85FER-like regulator of iron uptake