PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G325100.1.p
Common NameGLYMA_13G325100, LOC100813303
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 328aa    MW: 36058.5 Da    PI: 8.6597
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G325100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19241274134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Glyma.13G325100.1.p 241 CMHCEVTKTPQWREGPVGPKTLCNACGVRYRSGR 274
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.28E-14234296No hitNo description
PROSITE profilePS5011411.688235271IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16235285IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14239272IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-15240287No hitNo description
PfamPF003204.2E-17241274IPR000679Zinc finger, GATA-type
PROSITE patternPS003440241266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSKDIANMKD SWFFDNNFNG LSDEIFDDVI NFFDFPLEDV EANGVEEDWD AQLKCLEDPR  60
VDVYTASSAG LCAKTQNEKP QLGMKFSASG NGISPIKQLG KATGPVYGKT ITHQNVTSNG  120
KDLHQFQTYT YSPVSVFESS SSSSVENSNF DRPVIPVKRA RSKRQRPSSF SPLFSIPFIL  180
NSPAMQNHQR IAAADSDFGT NVAGNLSNKL KKQKKKDSSL LSDDVEMMRS SSPESGSPRK  240
CMHCEVTKTP QWREGPVGPK TLCNACGVRY RSGRLFPEYR PAASPTFVAS LHSNCHKKVV  300
EMRSRAIQEP VRGSMLASSN LHGNAVG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.245760.0epicotyl| flower| hypocotyl| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G325100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992130.0BT099213.1 Soybean clone JCVI-FLGm-23B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543479.10.0GATA transcription factor 11
TrEMBLI1M4J70.0I1M4J7_SOYBN; Uncharacterized protein
STRINGGLYMA13G40020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.29e-45GATA transcription factor 11