PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G328500.1.p
Common NameGLYMA_13G328500, LOC100819336
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 199aa    MW: 21954.8 Da    PI: 5.6145
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G328500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.22.5e-42301291100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l
  Glyma.13G328500.1.p  30 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICHLQKQVNEL 119
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +a+la++++e
  Glyma.13G328500.1.p 120 QAQLAKAQAE 129
                          ******9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.6829130IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-4330127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MESDTNTTFS HSSNTTPSSP PQQVQVVMIP CAACKILRRR CAEKCVLAPY FPPTEPAKFT  60
TAHRVFGASN IIKFLQELPE SQRADAVASM VYEAGARIRD PVYGCAGAIC HLQKQVNELQ  120
AQLAKAQAEV VNMQFQQANL VALICMEMAQ TQTPQESPQQ SVDNFISSPS HSSGYQNNLN  180
FFEENTNNLN SLWEPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-413013211113LOB family transfactor Ramosa2.1
5ly0_B2e-413013211113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.365591e-120cotyledon| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G328500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971751e-118BT097175.1 Soybean clone JCVI-FLGm-21N19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542002.11e-147LOB domain-containing protein 1
RefseqXP_028188659.11e-147LOB domain-containing protein 1-like
SwissprotQ9SK086e-79LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A445IDF41e-145A0A445IDF4_GLYSO; LOB domain-containing protein 11
TrEMBLK7M3861e-145K7M386_SOYBN; Uncharacterized protein
STRINGGLYMA13G40370.21e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.13e-67LOB domain-containing protein 11