PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G333200.3.p
Common NameGLYMA_13G333200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 205aa    MW: 22823 Da    PI: 4.4796
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G333200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.4e-14246548
                         -HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  5 TteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                         T++E+ l ++++ ++G++   W++Iar+++ gRt++++k++w++++
  Glyma.13G333200.3.p  2 TPQEERLVLELHSKWGNRspWWSRIARKLP-GRTDNEIKNYWRTLM 46
                         9******************9**********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.1E-7148IPR001005SANT/Myb domain
PROSITE profilePS5129423.303150IPR017930Myb domain
CDDcd001671.79E-11146No hitNo description
SuperFamilySSF466897.57E-12251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-17247IPR009057Homeodomain-like
PfamPF002491.3E-12245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTPQEERLVL ELHSKWGNRS PWWSRIARKL PGRTDNEIKN YWRTLMRKKA QEKKRGEAAS  60
SSPTPSSVDS SISSNNHAVD PHASKKAGEE SFYDTGGDNG VIAATQDQGQ KGDQQGLFSM  120
DDIWKDIDNM SEENNTTLQP VSVYDGHSEE GCNFSCPPQV PSPSSWEYSS SDPLWVMDEE  180
SLFCPLSEEP YFSCYAQGTV FLTG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G333200.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966870.0BT096687.1 Soybean clone JCVI-FLGm-21E3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235983.21e-152MYB transcription factor MYB139
RefseqXP_028191403.11e-152transcription factor MYB48-like isoform X1
SwissprotQ9LX824e-38MYB48_ARATH; Transcription factor MYB48
TrEMBLI1M4T01e-151I1M4T0_SOYBN; Uncharacterized protein
STRINGGLYMA13G40830.41e-115(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.27e-36myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]