PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G333400.1.p
Common NameGLYMA_13G333400, LOC100781211
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 172aa    MW: 19264.3 Da    PI: 8.928
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G333400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000474062123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C+++Fs+   L  H  +H
  Glyma.13G333400.1.p 40 FKCKTCNRRFSSFQALGGHRASH 62
                         89**********99999998887 PP
2zf-C2H210.60.001890112123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+Cg  F     L  H+r+H
  Glyma.13G333400.1.p  90 HPCPICGLEFAIGQALGGHMRKH 112
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-124064IPR007087Zinc finger, C2H2
SMARTSM003550.0864062IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.49E-740112No hitNo description
PROSITE profilePS5015710.3674067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PfamPF139121.2E-890114IPR007087Zinc finger, C2H2
SMARTSM003550.2990112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKRGREEGEL DMANCLMLLT KVGESETNYP ISKGRDDGDF KCKTCNRRFS SFQALGGHRA  60
SHKKPKLMVT DLSWHHELPN NPTMKQPRMH PCPICGLEFA IGQALGGHMR KHRSAINDGL  120
LCGKPSSLSI LKNSSKDAHE RLNLRLDLNL TPMEEDDLKL NLRTPVLNCF I*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.9860.0leaf| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G333400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4173300.0FJ417330.1 Glycine soja putative Cys2-His2 type zinc finger protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543503.11e-124zinc finger protein ZAT12
RefseqXP_028188792.11e-124zinc finger protein ZAT12-like
TrEMBLA0A445IDV81e-123A0A445IDV8_GLYSO; Zinc finger protein ZAT11
TrEMBLK7M3C61e-123K7M3C6_SOYBN; Uncharacterized protein
STRINGGLYMA13G40860.21e-124(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-38C2H2 family protein