PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G341700.1.p
Common NameGLYMA_13G341700, LOC100805812
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 409aa    MW: 45170.6 Da    PI: 6.6298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G341700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12342387655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Glyma.13G341700.1.p 342 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 387
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-17339400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-12340391No hitNo description
Gene3DG3DSA:4.10.280.102.8E-16341400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9342387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MESDLEQQPQ VNSSGLTRYR SAPSSYFSNI IDREFYEHVF NRPSSPETER VFSRFMNSLN  60
SEEEDSLHHH KLSTDSSSSS AAVKEEVVNQ HNQSVNEEHV VVAALQQSNN NMNSYNNSAS  120
RNFYQSSSSK PPLPNPNPNL SSGMEQGSFS MGLRHSGNNS NLIRHSSSPA GLFSQINIEN  180
VYAGVRGMGT LGAVNNSIED AKFSSSRRLK NQPNYSSSGR MSSIAEIGDK GNRESSPDNE  240
AFADGNDFIT GFQVGHWDDA AIMSDNVGGL KRFRENDSKP FSGLNAAETQ NETGQTHAPL  300
AHQLSLPNTS AEIAAIEKFL QFSDSVPCKI RAKRGCATHP RSIAERVRRT KISERMRKLQ  360
DLVPNMDKQT NTADMLDLAV DYIKDLQKQV QTLSDCHAKC TCSHEKQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.243950.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G341700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954350.0BT095435.1 Soybean clone JCVI-FLGm-25M5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543549.10.0transcription factor bHLH122
TrEMBLI1M5280.0I1M528_SOYBN; Uncharacterized protein
STRINGGLYMA13G41670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-66bHLH family protein