PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G344100.1.p
Common NameGLYMA_13G344100, LOC100813124
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 257aa    MW: 29646.4 Da    PI: 6.5166
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G344100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1835.1e-2679169190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          +fY +Y+++vGF+vr++++++s+ n++++ ++fvCskeg+r+++  ++ + r   + + tr gC+a++++ +++ gkw+vtk+++eH+H+
  Glyma.13G344100.1.p  79 EFYIAYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHR-RDRVlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHTHK 167
                          6******************************************98882.2222458899******************************* PP

                 FAR1  89 la 90 
                          l+
  Glyma.13G344100.1.p 168 LM 169
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.2E-2379169IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDHQSGQGFN SDDSDLDMQA EISEKHKKVD EFSKNLELCG SEDEMFVEIE QPLANISTDI  60
EAVEPFIGME FNSREEAREF YIAYGRRVGF TVRIHHNRRS RVNNQVIGQD FVCSKEGFRA  120
KKYVHRRDRV LPPPPATREG CQAMIRLALR DGGKWVVTKF VKEHTHKLMS PSKVPWRGSG  180
KHLVSEDEKD KRIRELSLEL YNERQKCKRR CAAYEEQLNM ILNDLEKHTE HISEKVAAVV  240
RSIREIEEEI SDSDGG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194710.0cotyledon| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G344100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543562.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_006595063.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLI1M5560.0I1M556_SOYBN; Uncharacterized protein
STRINGGLYMA13G41920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Representative plantOGRP8956514
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.15e-40FAR1 family protein