PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G344700.1.p

Common Name

GLYMA_13G344700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

DBB

Protein Properties

Length: 240aa MW: 26362.7 Da PI: 4.7818

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G344700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.8	3.9e-07	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ Glyma.13G344700.1.p 4 QCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP
2	zf-B_box	31	5.2e-10	53	94	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 + ++C+ +++k++ +fC +++ l+C+dC + +H+ H Glyma.13G344700.1.p 53 KLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAgslsanH 94 789******************************656666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.314	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.12E-6	3	47	No hit	No description
Pfam	PF00643	1.6E-5	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	8.7E-10	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.015	52	99	IPR000315	B-box-type zinc finger
SMART	SM00336	6.9E-15	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.3E-9	53	95	IPR000315	B-box-type zinc finger
CDD	cd00021	9.59E-8	55	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009640	Biological Process	photomorphogenesis
GO:0005634	Cellular Component	nucleus
GO:0000989	Molecular Function	transcription factor activity, transcription factor binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SSKLPRCDIC 60 QDKPAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIRVASSSNC TKDNEKSHLE 120 PPTRNAQQVS AKIPPQQVPS FTSSWAVDDL LELTAFESPE KKESLQFGEL EWLTDVGIFG 180 EQFAQEALAA AEVPQLPVTH NSSSVASYRT SKSYMSHKKP RIEVLNDDDD EYFTVPDLG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55632	0.0	cotyledon\| hypocotyl\| leaf\| pod\| seed coat\| somatic embryo\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers.

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269\|PubMed:12909688, ECO:0000269\|PubMed:17605755, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:21685177, ECO:0000269\|PubMed:22410790, ECO:0000269\|PubMed:23624715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G344700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269\|PubMed:17605755}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093937	0.0	BT093937.1 Soybean clone JCVI-FLGm-17P8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001242424.2	1e-177	B-box zinc finger protein
Swissprot	Q96288	2e-95	BBX24_ARATH; B-box zinc finger protein 24
TrEMBL	I1M564	1e-176	I1M564_SOYBN; Uncharacterized protein
STRING	GLYMA13G41980.1	1e-177	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3438	31	57
Representative plant	OGRP5397	10	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	3e-89	DBB family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G344700.1.p

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Imtiaz M, et al. Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis. Plant Mol. Biol., 2015. 89(1-2): p. 1-19 [PMID:26253592] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209]