PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G349700.2.p
Common NameGLYMA_13G349700, LOC102668887
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 218aa    MW: 24955.1 Da    PI: 6.2926
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G349700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.5e-398106199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++rrkC ++C+lapyfp++++k+f n+h+lFG+ +++++lk l++++r+ ams+++ye+++rardP+ G+++++l+lq+q++ +
  Glyma.13G349700.2.p   8 ACAACKYQRRKCGSNCILAPYFPHDRQKQFLNAHRLFGVGKITNMLKPLDQHHRDLAMSTVIYESDMRARDPIGGCYRLVLQLQSQIDYA 97 
                          7***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                           +el+ll +
  Glyma.13G349700.2.p  98 TQELHLLLQ 106
                          ****98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.2647108IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-368103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSRSSTQACA ACKYQRRKCG SNCILAPYFP HDRQKQFLNA HRLFGVGKIT NMLKPLDQHH  60
RDLAMSTVIY ESDMRARDPI GGCYRLVLQL QSQIDYATQE LHLLLQHLAF FKSHPPNSNS  120
PDIINNVTPQ PPYPLEQQIP QEHQQQQQQQ QCFNYNLLQD DINMWTIQNA VPPLSPLSLE  180
NDINQDQDPV VDYGYDQKPG VLDLMDKIKS DDSSAQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-23910112104LOB family transfactor Ramosa2.1
5ly0_B2e-23910112104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G349700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595095.11e-161LOB domain-containing protein 22
SwissprotQ9LRW14e-43LBD22_ARATH; LOB domain-containing protein 22
TrEMBLI1M5B91e-159I1M5B9_SOYBN; Uncharacterized protein
STRINGGLYMA13G42570.11e-160(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.17e-44LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]