PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G352600.1.p
Common NameGLYMA_13G352600, LOC100778004
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 451aa    MW: 49487.2 Da    PI: 6.5965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G352600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.4e-08358398954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r+RR+ri +++  L++++P        K++ a++L +A +Y+k L
  Glyma.13G352600.1.p 358 ARQRRERISERIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 398
                          69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926349398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-14355414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11357411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-5358398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-4371403No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDGLSWDASS VQLVANTPIL WSTQPQDLEG GYLHSMPHLC SSALNQTGYP YPCSEKVRGM  60
VHSSTTCEMM SMMPNTNLPQ RITATMPVKS VVAAGASWEE TLTSQSRPSL SANMNQTSNY  120
VADFNMAHQQ QHQHLINGTQ NGKATTCSLD QSLDCLLSAT NNSNTDMSVQ DDGISMILSD  180
CRNLWNNFSY GSVANSSGES ESNASINARN SDMRYPSVSE LDESVSQSFS DQYLSQGRVI  240
DSSEVICTKR SSSSGFSIAQ NSSATELGGF TLISETSPKS KRPRWDHKYP GSSNINFQQP  300
NSSVTPSFEE PDPEAIAQMK EMIYRAAAFR PVNLGLEAVE KPKRKNVRIS SDPQTVAARQ  360
RRERISERIR VLQKIVPGGS KMDTASMLDE AANYLKFLRS QVKALENLGN KLDTMNCPPT  420
NIAFSFNPSF PIQTHFPIQN PSSHIQYSKG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G352600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595103.10.0transcription factor bHLH87
RefseqXP_006595104.10.0transcription factor bHLH87
RefseqXP_014621600.10.0transcription factor bHLH87
SwissprotQ8S3D28e-85BH087_ARATH; Transcription factor bHLH87
TrEMBLK7M3P80.0K7M3P8_SOYBN; Uncharacterized protein
STRINGGLYMA13G42900.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Representative plantOGRP10281610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]