PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G359800.1.p

Common Name

GLYMA_13G359800, LOC100814194

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 385aa MW: 43887.9 Da PI: 4.3663

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G359800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.8	1.4e-13	154	238	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + +r++l+ W++++k + + ++er+ +qC+++++ l+k+ykk+k+ + ++ +++yf++++ Glyma.13G359800.1.p 154 WTERETFVLLDAWGDRFLQHGRKSLRCEEWQQIAKMVsQVSKIERTDTQCRNRLDTLKKKYKKEKAKFPDS-DGGACKWVYFKSMD 238 ***********************************555789**********************95.78888******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-5	113	122	IPR009057	Homeodomain-like
Pfam	PF13837	2.6E-20	153	240	No hit	No description
PROSITE profile	PS50090	6.202	154	211	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.9E-5	179	218	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDGIEDDARY PPNPYGYGYQ NSLYSPPVDT EYALDDNDEN EEHVQLEGED EVDVDQSNNL 60 QLPQKDDDEE DGMDGGGDEN DDDEEEEAEE NKQIDYYPTK SDEDEVEWHP KKQKLKSLIS 120 TYELAPRVPA PSVAATAPSV PKPSSGGRNS LTDWTERETF VLLDAWGDRF LQHGRKSLRC 180 EEWQQIAKMV SQVSKIERTD TQCRNRLDTL KKKYKKEKAK FPDSDGGACK WVYFKSMDEL 240 MASPPQQAGL SCGVDSGEYV FMNPRVHLNH ANGLDEMRDS PDNTESTGEE GSDGPQAKKR 300 KKRRGSGEAS SFRLLADSIQ KFSKIYEKIE NSKRQQMVEL EKMRMDFHKE LETQKRQILE 360 NLRCEISKLE QRNDDNDDSA ENGT*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDGIEDDARY PPNPYGYGYQ NSLYSPPVDT EYALDDNDEN EEHVQLEGED EVDVDQSNNL  60
QLPQKDDDEE DGMDGGGDEN DDDEEEEAEE NKQIDYYPTK SDEDEVEWHP KKQKLKSLIS  120
TYELAPRVPA PSVAATAPSV PKPSSGGRNS LTDWTERETF VLLDAWGDRF LQHGRKSLRC  180
EEWQQIAKMV SQVSKIERTD TQCRNRLDTL KKKYKKEKAK FPDSDGGACK WVYFKSMDEL  240
MASPPQQAGL SCGVDSGEYV FMNPRVHLNH ANGLDEMRDS PDNTESTGEE GSDGPQAKKR  300
KKRRGSGEAS SFRLLADSIQ KFSKIYEKIE NSKRQQMVEL EKMRMDFHKE LETQKRQILE  360
NLRCEISKLE QRNDDNDDSA ENGT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	297	301	KKRKK
2	297	303	KKRKKRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.59472	0.0	seed coat

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G359800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003543648.1	0.0	trihelix transcription factor ASIL1
TrEMBL	K7M3V1	0.0	K7M3V1_SOYBN; Uncharacterized protein
STRING	GLYMA13G43651.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-63	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G359800.1.p
Entrez Gene	100814194