PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G359800.2.p
Common NameGLYMA_13G359800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 358aa    MW: 40895.9 Da    PI: 4.4835
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G359800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-13127211286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          Wt++e+ +L++a  ++  + +r++l+   W++++k + +  ++er+ +qC+++++ l+k+ykk+k+   +  ++   +++yf++++
  Glyma.13G359800.2.p 127 WTERETFVLLDAWGDRFLQHGRKSLRCEEWQQIAKMVsQVSKIERTDTQCRNRLDTLKKKYKKEKAKFPDS-DGGACKWVYFKSMD 211
                          *************************************555789**************************95.78888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-58695IPR009057Homeodomain-like
PfamPF138372.3E-20126213No hitNo description
PROSITE profilePS500906.202127184IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-5152191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MALRMMQDDN DENEEHVQLE GEDEVDVDQS NNLQLPQKDD DEEDGMDGGG DENDDDEEEE  60
AEENKQIDYY PTKSDEDEVE WHPKKQKLKS LISTYELAPR VPAPSVAATA PSVPKPSSGG  120
RNSLTDWTER ETFVLLDAWG DRFLQHGRKS LRCEEWQQIA KMVSQVSKIE RTDTQCRNRL  180
DTLKKKYKKE KAKFPDSDGG ACKWVYFKSM DELMASPPQQ AGLSCGVDSG EYVFMNPRVH  240
LNHANGLDEM RDSPDNTEST GEEGSDGPQA KKRKKRRGSG EASSFRLLAD SIQKFSKIYE  300
KIENSKRQQM VELEKMRMDF HKELETQKRQ ILENLRCEIS KLEQRNDDND DSAENGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270274KKRKK
2270276KKRKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.594720.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G359800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543648.10.0trihelix transcription factor ASIL1
TrEMBLA0A0R0H8500.0A0A0R0H850_SOYBN; Uncharacterized protein
STRINGGLYMA13G43651.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.18e-64Trihelix family protein