PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G363600.1.p
Common NameGLYMA_13G363600, LOC102663279
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 171aa    MW: 19153.7 Da    PI: 9.5732
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G363600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-082144226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         kte Cr+f+r G C +G++C +aH+
  Glyma.13G363600.1.p 21 KTEMCRRFRR-GVCVHGSKCIYAHS 44
                         8*********.*************8 PP
2zf-CCCH23.21.2e-075677526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                          Crff+++  C+yG +C+F H+
  Glyma.13G363600.1.p 56 QCRFFLQNKRCHYGRTCRFLHS 77
                         6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-81849IPR000571Zinc finger, CCCH-type
SMARTSM003560.00211945IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-121949IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.461946IPR000571Zinc finger, CCCH-type
SMARTSM003560.415178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5265179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-65378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-65381IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-55677IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEAQSHGFNA ESSDSNKLMV KTEMCRRFRR GVCVHGSKCI YAHSVAELRL QRQPKQCRFF  60
LQNKRCHYGR TCRFLHSSTP LNPNPQPEVG KLDPYSSPES KRMRTCAAAP SDDGCSSAEQ  120
RIMQTSAAAD AATNASTSTV ATKNEPSYPV KFIFKNNDLQ RISRIYADWI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G363600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595161.11e-127probable E3 ubiquitin-protein ligase makorin-2
RefseqXP_025980732.11e-127probable E3 ubiquitin-protein ligase makorin-2
TrEMBLK7M3X61e-125K7M3X6_SOYBN; Uncharacterized protein
STRINGGLYMA13G44045.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1595477
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-09C3H family protein