PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G368600.1.p

Common Name

GLYMA_13G368600, LOC100809351

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 219aa MW: 24730.8 Da PI: 8.6255

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G368600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	43	89	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+ + ++f L ++P + kK +Ka++L +A++Y+k+L+ Glyma.13G368600.1.p 43 DHIMSERKRRQLMAERFIALSAIIPGL-----KKIDKASVLSEAINYVKQLK 89 5999*********************.....9***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.875	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-15	43	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-9	43	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-15	43	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.58E-10	44	89	No hit	No description
SMART	SM00353	7.2E-11	45	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MGGDISFFSE EHPNPTLYCV ANETHVQTGA KRGRSSWETP TRDHIMSERK RRQLMAERFI 60 ALSAIIPGLK KIDKASVLSE AINYVKQLKG RIAVLEQESS NKKSMMIFTK KCLQSHPHCE 120 KNSNHVLPQL QVEAIGLELE REVLIRILCE KPKGIFLKLL TLLENMHLSI VSSNVLPLGK 180 NTLNITIIAQ MGEEYNMTGD ELMSKLTQDL FKLYEVPQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	52	ERKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G368600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003542127.1	1e-161	transcription factor bHLH19
TrEMBL	A0A0B2RIV9	1e-160	A0A0B2RIV9_GLYSO; Transcription factor bHLH19
TrEMBL	K7M401	1e-160	K7M401_SOYBN; Uncharacterized protein
STRING	GLYMA13G44582.1	1e-161	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14964	8	13
Representative plant	OGRP656	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	6e-29	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G368600.1.p
Entrez Gene	100809351