PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G369500.1.p
Common NameGLYMA_13G369500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 229aa    MW: 25191.2 Da    PI: 8.4883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G369500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000177294123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C + F ++  L  H++ H
  Glyma.13G369500.1.p 72 FSCNYCQRKFYSSQALGGHQNAH 94
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-66999No hitNo description
PROSITE profilePS5015711.4277299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDTQKEKKED NEHPHESASD LVLDLSLPSK HSGGDGESKP ELNLINCIDT NLSMNSSESS  60
HGHGDELEPR IFSCNYCQRK FYSSQALGGH QNAHKRERTL VKRGHKAGAA VSIDFARRYS  120
SMASLPLHGS YNRSSLGIQA HSMISKPSYQ SPFFGLSRSH AQKRPMFSQP PIGTESESSL  180
TGGIPVPRLG NFSPRLVPEG LGGYWLDSVN HLKTKQEELH KLDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G369500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-101AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542133.11e-167zinc finger protein 1
RefseqXP_028188996.11e-167zinc finger protein 1-like
TrEMBLA0A0R0GZ281e-167A0A0R0GZ28_SOYBN; Uncharacterized protein
STRINGGLYMA13G44670.21e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-39zinc-finger protein 1