PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G001700.1.p
Common NameGLYMA_14G001700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 156aa    MW: 17589 Da    PI: 8.5926
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G001700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00142746221
                         EETTTTEEESSHHHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                         +C+ Cgk F ++  L  H+r
  Glyma.14G001700.1.p 27 PCTECGKKFWSWKALFGHMR 46
                         5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-72650IPR007087Zinc finger, C2H2
PROSITE profilePS501579.392648IPR007087Zinc finger, C2H2
SMARTSM003550.022648IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.83E-62748No hitNo description
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-42848IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-692119No hitNo description
PfamPF139125.9E-1397121IPR007087Zinc finger, C2H2
PROSITE profilePS501579.05897124IPR007087Zinc finger, C2H2
SMARTSM003550.7197119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKRECGEASS CSRKKQKRLM EDAGARPCTE CGKKFWSWKA LFGHMRCHPE RHWRGINPPA  60
NVVRRQQEQE QMSQEDHEVA ASLLLLANSN VLESDGHKCS ICLRVFSTGQ ALGGHKRCHW  120
DSSSSKSLSV LDFDLNFPPP LTLDLSAYKY ESPNK*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the germ cells following microspore division, increases during development and persists into mature pollen. {ECO:0000269|PubMed:24876252}.
UniprotTISSUE SPECIFICITY: Expressed exclusively in pollen. {ECO:0000269|PubMed:24876252}.
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G001700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150362e-36AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596577.11e-105zinc finger protein ZAT3
RefseqXP_028201014.11e-105zinc finger protein ZAT3-like
SwissprotO654996e-31ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A0R0GH001e-112A0A0R0GH00_SOYBN; Uncharacterized protein
STRINGGLYMA14G00480.21e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF6667710
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-21C2H2-like zinc finger protein