PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G006800.1.p
Common NameGLYMA_14G006800, LOC100781219
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 509aa    MW: 55800.7 Da    PI: 7.2035
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G006800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.61.9e-26114170259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vkg+ef rsYY+Ct+++C++kk++++s+ ++++++ +  g+Hnh+
  Glyma.14G006800.1.p 114 KDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQSN-NGHITDSICIGQHNHP 170
                          7***************************************9.***************8 PP
2WRKY100.78.5e-32289347159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver++ d k+v++tYeg+H+he
  Glyma.14G006800.1.p 289 VNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASYDSKTVITTYEGQHDHE 347
                          58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-23107172IPR003657WRKY domain
PROSITE profilePS5081119.187108172IPR003657WRKY domain
SuperFamilySSF1182902.35E-22109172IPR003657WRKY domain
SMARTSM007749.0E-29113171IPR003657WRKY domain
PfamPF031062.7E-21114170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-33277349IPR003657WRKY domain
SuperFamilySSF1182906.02E-28281349IPR003657WRKY domain
PROSITE profilePS5081134.348284349IPR003657WRKY domain
SMARTSM007742.0E-35289348IPR003657WRKY domain
PfamPF031067.7E-25290346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MVSTDKSADQ NIPSDELQQR VSPDSDTTLS QGHDTKNDLS KPEEATSILS IVVKNEEGKD  60
SDATACALES DQEGSTCSLP LGKPLQSPDT LSHEFPRLQS SQECPSIIRE KVSKDGYNWR  120
KYGQKHVKGN EFIRSYYKCT HPNCQAKKQL QQSNNGHITD SICIGQHNHP RPQLNSTVSV  180
ECVLPVVEQA PHKPSLANVE DKASVEHGCM PQQIKPLQSF PPAKVSPVNE LKAAHLQLTK  240
AKNQVHDNKE PESKRLKKDN SNADVARVDM STRESRVVVV QTSSEVDLVN DGYRWRKYGQ  300
KLVKGNTNPR SYYRCSNPGC PVKKHVERAS YDSKTVITTY EGQHDHEIPP GRTVTQNAAT  360
NTRTTATNGK AGTKSEGNTD DTGERSGLGL TSRLTEQQTG KSTTKSKAGD MVEFRVIRLS  420
NEGPEIKLSE QQQQKDNSAT KDDSVSNDVI CHSSSGVLCR SNEQLKGEVK PISEGSKDCL  480
KVVAVHDTPS TESEFNKQSA ADAEPVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-35278351376WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.77990.0cotyledon| leaf| root| seed coat| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G006800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595661.10.0WRKY transcription factor 1
SwissprotQ9SI377e-76WRKY1_ARATH; WRKY transcription factor 1
TrEMBLI1M6900.0I1M690_SOYBN; Uncharacterized protein
STRINGGLYMA14G01010.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-76zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]