PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G016200.2.p
Common NameGLYMA_14G016200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 494aa    MW: 53590.2 Da    PI: 7.3214
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G016200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.5e-32137194260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Glyma.14G016200.2.p 137 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 194
                          8****************************************.***************85 PP
2WRKY106.51.3e-33312370159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Glyma.14G016200.2.p 312 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 370
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.996131195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-27131195IPR003657WRKY domain
SuperFamilySSF1182902.35E-25133195IPR003657WRKY domain
SMARTSM007742.3E-34136194IPR003657WRKY domain
PfamPF031066.2E-25137193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.4E-38297372IPR003657WRKY domain
SuperFamilySSF1182901.7E-29304372IPR003657WRKY domain
PROSITE profilePS5081138.825307372IPR003657WRKY domain
SMARTSM007743.1E-39312371IPR003657WRKY domain
PfamPF031062.8E-26313370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MHGSMASAAF PVTTACFDTN TVDDRKSSFF EFKPLSRSNM VPADFNNHVS KQSTQVEGPG  60
KTQSFASSPL VESEIAVPSN ELSLSSPVQK VSSSASAPVD VDLDDINHKG NTATGLQASH  120
VEVRGSGLSV AAEKTSDDGY NWRKYGQKLV KGSEFPRSYY KCTHPNCEVK KLFERSHDGQ  180
ITEIVYKGTH DHPKPQPSCR YSTGTVMSIQ GERSDKASMA GRDDKATAMY GQVSHAAEPN  240
STPESSPVAT NDDGLEGVAG FVSNRTNEEV DNDDPFSKRR KMELGNVDIT PVVKPIREPR  300
VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTN AGCPVRKHVE RASHDPKAVI  360
TTYEGKHNHD VPAARNSSHD MAVPAAAAGG QTRTKLEESD TISLDLGMGI SSAAEHRSNG  420
QGKMLHSEFG DTQTHTSSSN FKFVHTTSAP VYFGVLHNSS NPFGSRDNRS DGPSLNRSSY  480
PCPQSMGRIL MGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38137373878Probable WRKY transcription factor 4
2lex_A8e-38137373878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.66830.0hypocotyl| leaf| meristem| root| seed coat| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO324931070.0
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G016200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3231280.0AY323128.1 Glycine max putative WRKY-type DNA binding protein (WRKY1) mRNA, complete cds.
GenBankEU0195550.0EU019555.1 Glycine max WRKY7 (WRKY7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236902.20.0WRKY transcription factor 7
SwissprotQ93WV01e-156WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLI1M6J30.0I1M6J3_SOYBN; Uncharacterized protein
STRINGGLYMA14G01980.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-153WRKY family protein