PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G030700.2.p
Common NameGLYMA_14G030700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 326aa    MW: 37558.4 Da    PI: 8.5483
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G030700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.4e-50361622128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPtdeelv +yL++kve+k+l++ e ik++diyk++PwdLp + + +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+
  Glyma.14G030700.2.p  36 LPGFRFHPTDEELVGFYLRRKVEKKPLRI-ELIKQIDIYKYDPWDLP-MSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKP 123
                          69***************************.89***************.4456899*********************************** PP

                  NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++    +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Glyma.14G030700.2.p 124 IYCVrePQECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 162
                          **98545566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5333193IPR003441NAC domain
PROSITE profilePS5100552.88735194IPR003441NAC domain
PfamPF023654.9E-2537162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKVPKFSSVA HRLIMDVAKL HNSDDDDDKK EEEVVLPGFR FHPTDEELVG FYLRRKVEKK  60
PLRIELIKQI DIYKYDPWDL PMSSVGEKEW YFFCIRGRKY RNSIRPNRVT GSGFWKATGI  120
DKPIYCVREP QECIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPNGKTSN NPQANDANDV  180
QEAEVWTLCR IFKRVPTYKK YTPNLKDSAA PITEPNHPTN SSSSKTCSLE SDNCKPYLTF  240
TNSSSPQLIL QNERKPVING HVDVERNHLF LGQLGNVAQA PSFWNHHQNN NVEFANENWD  300
DLTSVVQFAI DPSRVSDHSK EFNRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-47212003171NO APICAL MERISTEM PROTEIN
1ut4_B2e-47212003171NO APICAL MERISTEM PROTEIN
1ut7_A2e-47212003171NO APICAL MERISTEM PROTEIN
1ut7_B2e-47212003171NO APICAL MERISTEM PROTEIN
4dul_A2e-47212003171NAC domain-containing protein 19
4dul_B2e-47212003171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G030700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0955300.0BT095530.1 Soybean clone JCVI-FLGm-15A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199812.10.0transcription factor JUNGBRUNNEN 1-like isoform X2
SwissprotQ9SK551e-92NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLK7M4P10.0K7M4P1_SOYBN; Uncharacterized protein
STRINGGLYMA14G03441.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-93NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]