PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G055700.1.p
Common NameGLYMA_14G055700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 318aa    MW: 37113.3 Da    PI: 4.5867
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G055700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-13797196
                         EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                         f++v++p+ +++s  + +p  f+++    g   + + +++l++   r+W+vk   r  ++++++++GWk F ++n L   D +vFk+dg + 
  Glyma.14G055700.1.p  7 FVTVFKPEEHSES--MLIPDAFVKSTrlqG-W-RIPEDVILTNVGRRVWNVKT--RLVGNKIYFEEGWKVFQEENFLGKEDYLVFKYDGANI 92
                         5666655444444..8*******9998742.3.47789***************..777778**************************99888 PP

                         E..EEEE CS
                   B3 90 felvvkv 96
                         f  +v +
  Glyma.14G055700.1.p 93 F--KVVI 97
                         8..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-164101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.0555101IPR003340B3 DNA binding domain
CDDcd100171.26E-13598No hitNo description
SuperFamilySSF1019363.34E-155100IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.2E-117101IPR003340B3 DNA binding domain
PfamPF023626.1E-11797IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-7191313IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-7191313IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3197307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAAKKYFVTV FKPEEHSESM LIPDAFVKST RLQGWRIPED VILTNVGRRV WNVKTRLVGN  60
KIYFEEGWKV FQEENFLGKE DYLVFKYDGA NIFKVVILEQ SSRCERTEAE EEDEVIEITD  120
DEEHEEAEDD EDEGDDDDQY REMEEEHSAE YMRSQSHPRR ASKRLSATSY SPTVEGPHLE  180
DYEFDPQMYI QPGNPNFEAK LFKNRPNELH VPKNVIKDSS LTFGEQITLS RCQCFQFEDT  240
QRDELRDYHG LPQWTPIYSE VAKVSEWRDG RVCIKGWTSF CKKNKINKND ACICEIISGE  300
DRIIRTIQVH VLGARNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G055700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595849.20.0B3 domain-containing protein REM20 isoform X2
TrEMBLK7M5360.0K7M536_SOYBN; Uncharacterized protein
STRINGGLYMA14G06031.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.13e-19B3 family protein