PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G057600.1.p
Common NameGLYMA_14G057600, LOC100777635
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 183aa    MW: 20363.1 Da    PI: 7.3625
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G057600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.36.9e-40111101100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l
  Glyma.14G057600.1.p  11 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 100
                          6***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++la +k++
  Glyma.14G057600.1.p 101 QHDLAIAKDR 110
                          ****999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.42510111IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3911108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKGYEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILVEVP  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARYTAAATT  120
ATATTTTSDA LINGHVSLPP FPDFFTCADN FNNDNFCHTS SSQSSFTRHE TVDDFIQIPY  180
IF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4761146114LOB family transfactor Ramosa2.1
5ly0_B4e-4761146114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G057600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358820.0AC235882.2 Glycine max clone GM_WBc0011M13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544066.11e-134LOB domain-containing protein 21
RefseqXP_028199722.11e-134LOB domain-containing protein 21-like
SwissprotQ9SRL83e-64LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A445H1X31e-133A0A445H1X3_GLYSO; LOB domain-containing protein 21
TrEMBLI1M7R71e-133I1M7R7_SOYBN; Uncharacterized protein
STRINGGLYMA14G06270.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-64LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]