PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G058100.3.p
Common NameGLYMA_14G058100, LOC102661292
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 229aa    MW: 25861.1 Da    PI: 7.1169
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G058100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.5e-181257147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W+++Ed  l+++v+++G ++W+ I++ ++ gR++k+c++rw + 
  Glyma.14G058100.3.p 12 KGSWSPQEDATLLKLVNEHGARNWSVISAGIP-GRSGKSCRLRWCNQ 57
                         799*****************************.***********985 PP
2Myb_DNA-binding55.31.5e-1766108347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+ Ed+ +++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
  Glyma.14G058100.3.p  66 PFTPAEDKMIIKAHAIHGNK-WATISRLLP-GRTDNAIKNHWNST 108
                          89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.736758IPR017930Myb domain
SuperFamilySSF466892.26E-309105IPR009057Homeodomain-like
SMARTSM007172.6E-151160IPR001005SANT/Myb domain
PfamPF002495.5E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-241365IPR009057Homeodomain-like
CDDcd001673.78E-141456No hitNo description
PROSITE profilePS5129424.57559113IPR017930Myb domain
SMARTSM007174.5E-1563111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2366112IPR009057Homeodomain-like
CDDcd001673.84E-1266109No hitNo description
PfamPF002496.6E-1566108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTTMTGGDNR VKGSWSPQED ATLLKLVNEH GARNWSVISA GIPGRSGKSC RLRWCNQLSP  60
EVQHRPFTPA EDKMIIKAHA IHGNKWATIS RLLPGRTDNA IKNHWNSTLR RRRTAEQSSS  120
SSASPPAKRP SSLFDTLHPL KKQCIEKENE EESPVTTSLS LFPPGEKSEE EEEEEEKEEF  180
ANQKVSDQNY FMQMMQRMIA EEVRNYMETL RNCSLEPGLD LLSPTLPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-37111123104MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-361111257158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-361111257158MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-37111123104C-Myb DNA-Binding Domain
1msf_C9e-37111123104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.137560.0meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G058100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595859.11e-170transcription factor MYB73 isoform X1
RefseqXP_028199805.11e-170transcription factor MYB73-like isoform X1
TrEMBLA0A0R0GGR71e-169A0A0R0GGR7_SOYBN; Uncharacterized protein
STRINGGLYMA14G06320.21e-162(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-52myb domain protein 73