PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G069700.1.p
Common NameGLYMA_14G069700, Glyma14g07590.1, LOC106795957
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 294aa    MW: 32482.2 Da    PI: 6.2547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G069700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.5e-10215256955
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Glyma.14G069700.1.p 215 AKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 256
                          69*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-12207264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-11208260No hitNo description
SuperFamilySSF474591.83E-13208265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-7216256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MALSLTSNGV NEYQKCVVEE EDGSQSTNGL SNDSASAITN SPPLCGNEYV HKSTHYQLEE  60
AESLINFKAN DQYNNLMQGS ESFLSFQQSW MFSKESNLHE GYNQWNHVIS PKSPTDMRLV  120
QNFSCFETAT GYSSIFNGAK DKQHGESSSS GWLYSEPNVP SDSLHESAAQ ELVLKKRSFM  180
GENMQVTNAK KPCTSASKAA KPKSNPSQDP QSVAAKNRRE RISERLKILQ ELVPNGSKVD  240
LVTMLEKAIS YVKFLQLQVK VLAADEFWPV QGGKAPDISQ VRQAIDAILS SQR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.3891e-168root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO68473961e-168
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G069700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311230.0KT031123.1 Glycine max clone HN_CCL_81 bHLH transcription factor (Glyma14g07590.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622378.10.0putative transcription factor bHLH086
RefseqXP_028200080.10.0putative transcription factor bHLH086
SwissprotQ9FJ001e-61BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A445H2N20.0A0A445H2N2_GLYSO; Putative transcription factor bHLH086
TrEMBLI1M8670.0I1M867_SOYBN; BHLH transcription factor
STRINGGLYMA14G07590.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Representative plantOGRP35321326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.15e-64RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Kim CM,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon.
    PLoS Genet., 2016. 12(8): p. e1006211
    [PMID:27494519]
  4. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]