PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G074500.1.p
Common NameGLYMA_14G074500, LOC100804049
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 99aa    MW: 11171.5 Da    PI: 7.765
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G074500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285.1e-09651346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +WTt   +++ +a + +  +   +W   ar +g g+t +++k ++ +
  Glyma.14G074500.1.p  6 AWTTKQNKKFENALAIYDRDtpdRWQNLARAVG-GKTVEEVKRHYEM 51
                         8*****************99*************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.034262IPR017884SANT domain
SMARTSM007174.0E-7355IPR001005SANT/Myb domain
CDDcd001671.34E-6653No hitNo description
Gene3DG3DSA:1.10.10.601.3E-5659IPR009057Homeodomain-like
PfamPF002497.2E-6652IPR001005SANT/Myb domain
SuperFamilySSF466891.14E-12760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASSSAWTTK QNKKFENALA IYDRDTPDRW QNLARAVGGK TVEEVKRHYE MLVDDLKQIE  60
EGHVPLPNYR NAAATGGGSI RGYSYMDEEQ RMKVLSLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-31298693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G074500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-106AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545280.13e-69protein RADIALIS-like 4 isoform X1
RefseqXP_028198407.13e-69protein RADIALIS-like 4 isoform X1
SwissprotF4JVB85e-35RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A445H2R27e-68A0A445H2R2_GLYSO; Protein RADIALIS-like 1 isoform A
TrEMBLK7M5F67e-68K7M5F6_SOYBN; Uncharacterized protein
STRINGGLYMA14G08101.11e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-37RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]