PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G079000.1.p
Common NameGLYMA_14G0790002, LOC106795723
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 194aa    MW: 21568.2 Da    PI: 7.4745
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G079000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.52e-30253455
              G2-like  4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         +rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Glyma.14G079000.1.p  2 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 53
                         89*************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.23E-14254IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-23253IPR006447Myb domain, plants
PfamPF002492.5E-7252IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-26254IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MMRWTTTLHA HFVHAVQLLG GHERATPKSV LELMNVKDLT LAHVKSHLQM YRTVKSTDKG  60
ITAAGHGQTG IGLMNPRPGI NVHLHALSPI CDTPNLPDPI QSSHRTPWQS SIETKTNNRR  120
QEEPEIGLTY SHLKGNNNNN ETTVDGHNNY GGLDSTPLSR SEEAMLDLEF TLGRPNWQKD  180
HTESSRELTL LKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16255558Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16255558Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16255457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16255457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16255457Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16255457Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16255558Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16255558Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16255558Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16255558Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16255558Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16255558Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202580.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G079000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719895e-50KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622057.11e-142probable transcription factor KAN4
TrEMBLI1M8H71e-141I1M8H7_SOYBN; Uncharacterized protein
STRINGGLYMA14G08620.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.13e-46G2-like family protein