PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G088400.1.p
Common NameGLYMA_14G088400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 351aa    MW: 39166.2 Da    PI: 4.5984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G088400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-102773171055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Glyma.14G088400.1.p 277 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 317
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-14267331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-12272326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-11273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.37E-12276321No hitNo description
PfamPF000108.5E-8277317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEPAGAFPDG EWDFFRRIFA GEDHEHDLFT PQFPLLLDGD DELNIVTQPT FCAAPEVGEN  60
ERMFYSLDAH HSNSSQYISQ ESSHSNSSNC SGDDTIFIAN PGSTNYYFSY PDHVLANNAC  120
VYSMDEKYFA SFVPSLADIV TEESVKLHED VASDDRLENS ECNQMEPIVF PSKQLQLKRK  180
LDVPAEDKMN KGSENQKKRA RALKDGQGCM KNTWSKKNQK HASNGEEAEE TNAGSDGQSS  240
SSNMSEDDNI SKSALNSNGK TRASRGSATD PQSLYARKRR ERINERLRIL QNLVPNGTKV  300
DISTMLEEAV NYVKFLQLQI KLLSSDDLWM YAPLAYNGLD IGLNLNSLSL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G088400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198711.10.0transcription factor bHLH85-like
TrEMBLA0A0B2PJB90.0A0A0B2PJB9_GLYSO; Transcription factor bHLH84
TrEMBLK7M5P80.0K7M5P8_SOYBN; Uncharacterized protein
STRINGGLYMA14G09781.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-42bHLH family protein