PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G094800.2.p
Common NameGLYMA_14G094800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 249aa    MW: 27722.3 Da    PI: 10.3101
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G094800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.66.9e-18112145134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+t++TplWR gp g+k+LCnaCG+++rk +
  Glyma.14G094800.2.p 112 CSDCNTSTTPLWRTGPKGPKSLCNACGIRQRKAR 145
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.086106142IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-12106146No hitNo description
SMARTSM004017.4E-18106157IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-15110145IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.65E-12111148No hitNo description
PfamPF003208.6E-16112145IPR000679Zinc finger, GATA-type
PROSITE patternPS003440112137IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MILHDGSSSN CNSSFNISPE TVVMVDPLSS ACDRRNLPSE EESKNNDHGS GNKWMSSKMR  60
LMKKMMRPSI SPTTDKAINS SPRFQNHQGL ESRRYSQRSP RNNNGSSTPR VCSDCNTSTT  120
PLWRTGPKGP KSLCNACGIR QRKARRAMAE AANGLVTPIA CEKTRLHNKE KKSRMNHFAQ  180
FKNKYKSTTT TTTTTVGSSE GVRKLEYFNN FAISLRSNNS DFEQMFPRDE VAEAALLLMD  240
LSCGFVHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.126330.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G094800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150369e-80AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545375.10.0putative GATA transcription factor 22
RefseqXP_028199200.10.0putative GATA transcription factor 22
TrEMBLA0A0R0GBN90.0A0A0R0GBN9_SOYBN; Uncharacterized protein
TrEMBLA0A445H3V90.0A0A445H3V9_GLYSO; Putative GATA transcription factor 22
STRINGGLYMA14G10830.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-21cytokinin-responsive gata factor 1