PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G110600.2.p
Common NameGLYMA_14G110600, LOC100803879
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 666aa    MW: 73548.5 Da    PI: 6.2333
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G110600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.8e-28206259155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Glyma.14G110600.2.p 206 KPRVVWSVELHRKFVSAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 259
                          79*******************.********************************8 PP
2Response_reg77.16.4e-26221301109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+ + +++l+++l++ +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +++++++ +
  Glyma.14G110600.2.p  22 VLAVDDDSTCLMVLETLLRRCQY-HVTTTKNAITALKLLRENKtmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNDDPKMVMK 109
                          799********************.***************99999********************87754.558***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+ +eel +
  Glyma.14G110600.2.p 110 GITHGACDYLLKPVRIEELQN 130
                          ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.3E-1681664IPR017053Response regulator B-type, plant
SuperFamilySSF521723.13E-3519144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.5E-4219154No hitNo description
SMARTSM004485.4E-3120132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.28321136IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2322130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.66E-2623136No hitNo description
SuperFamilySSF466899.14E-20203263IPR009057Homeodomain-like
PROSITE profilePS5129410.715203262IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-30205264IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-25206259IPR006447Myb domain, plants
PfamPF002497.6E-7208258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MTVVEDHRMD DLRDQFPIGM RVLAVDDDST CLMVLETLLR RCQYHVTTTK NAITALKLLR  60
ENKTMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NDDPKMVMKG ITHGACDYLL  120
KPVRIEELQN IWQHVIRRKK IDSKERNKTS DHDKPNADNG NGRVSAGTGN SDQNGKPSKK  180
RKDQDEDDEE ENEDGHDNED SSTLKKPRVV WSVELHRKFV SAVNQLGIDK AVPKKILDLM  240
NVEKLTRENV ASHLQKYRLY LKRISCVANR QANLVAALGT ADSSYLRMGS LSGVGHMQTL  300
TGPQQFHNNA FRPFPPGGMI GRLNASVGLN MHGISSSEAL QLSHAQNLNK SINDPLKFQS  360
AIACGNQNGI QGMPMSIGLD QLQHNKGVSV GPIQNMSSLI DDRPTFGVSK KLSDQTQKVT  420
IGCSPSPVLD ISNNDLVLKA DSENTQGGGV YENLTSVASQ HSQFSLPLLD HGRCSDIWSS  480
PMQSSGTNSY PPSETLQGGN LSGQSSITSL FNQSHDSPTD MHSQGLIFTN NLGQMSNNVP  540
FQGWDDNNHD SNYDANVIGN SIDTLIDPEG HTSINSNYNR NLDFNFCNPL QMKHDGIMGL  600
SEENSLKQQY GYIMNRQKSQ NSSATNNLGS LEDFASSMMK QKQDKVKFLD GSYLCNNNYP  660
AGTSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-24205265464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G110600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362210.0AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622044.10.0two-component response regulator ARR12
RefseqXP_028199202.10.0two-component response regulator ARR12-like
SwissprotQ6K8X61e-140ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A445H4H90.0A0A445H4H9_GLYSO; Two-component response regulator
TrEMBLI1M9E90.0I1M9E9_SOYBN; Two-component response regulator
STRINGGLYMA14G13320.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-135response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]