PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G119000.1.p
Common NameGLYMA_14G119000, LOC102660725
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 243aa    MW: 27081.7 Da    PI: 7.3254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G119000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-172063448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         W ++Ed +l++ v+++G+ +W++Ia+++  gRt+k+c++rw+++l
  Glyma.14G119000.1.p 20 WKKDEDVKLLQQVREHGPQNWRSIASHLE-GRTAKSCRLRWRNHL 63
                         *****************************.*************97 PP
2Myb_DNA-binding50.83.9e-1669113147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T eE+e+l+ a++ +G + W++I++ ++ gRt++ +k++w+  
  Glyma.14G119000.1.p  69 RNPFTGEEEERLLAAHEVYGAR-WALISKLFN-GRTDNAVKNHWHVM 113
                          789*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.3071267IPR017930Myb domain
SuperFamilySSF466891.76E-2814110IPR009057Homeodomain-like
SMARTSM007173.4E-151665IPR001005SANT/Myb domain
PfamPF139213.3E-182080No hitNo description
Gene3DG3DSA:1.10.10.601.1E-232071IPR009057Homeodomain-like
CDDcd001672.23E-152063No hitNo description
SMARTSM007172.2E-1368116IPR001005SANT/Myb domain
PROSITE profilePS5129418.67668118IPR017930Myb domain
CDDcd001673.64E-1171113No hitNo description
Gene3DG3DSA:1.10.10.603.9E-1872115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MANSSAAAED ITNRLRVNYW KKDEDVKLLQ QVREHGPQNW RSIASHLEGR TAKSCRLRWR  60
NHLDPRVNRN PFTGEEEERL LAAHEVYGAR WALISKLFNG RTDNAVKNHW HVMRARKRRE  120
SKQKNWPGVF QDSYASSSSN TVLHPNGPNP HDMVCPSNGS SSSAKFGTIP SFADSTPVNG  180
SDHFGLFNGA DDAMLQRSLF DNSFAEFGSS SSSVQVQADE ESNGSGQKEV PFFDFLGVGD  240
DQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-292011710107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G119000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596265.10.0transcription factor MYB54
RefseqXP_028198715.10.0transcription factor MYB54-like
TrEMBLA0A445H6G81e-180A0A445H6G8_GLYSO; Transcription factor MYB105
TrEMBLK7M7671e-180K7M767_SOYBN; Uncharacterized protein
STRINGGLYMA14G27235.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2020555
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-45myb domain protein 105