PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G140100.4.p
Common NameGLYMA_14G140100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 373aa    MW: 41465 Da    PI: 8.6894
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G140100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.6e-55271541128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++k+++++++  ++i++vd++k+ePw+Lp+k+k ++kewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Glyma.14G140100.4.p  27 LPPGFRFHPTDEELISYYLTNKISDSNFTG-KAIADVDLNKCEPWELPEKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 115
                          79*************************999.88***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+l++ ++elvg+kktLvfykgrap+gek++Wvmheyr+
  Glyma.14G140100.4.p 116 EILNSaTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 154
                          ***9878899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-6324176IPR003441NAC domain
PROSITE profilePS5100561.13327176IPR003441NAC domain
PfamPF023657.2E-2928154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MQKDKEVITK EGKDIEMEGN HEKEETLPPG FRFHPTDEEL ISYYLTNKIS DSNFTGKAIA  60
DVDLNKCEPW ELPEKAKMGQ KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEILNS  120
ATSELVGMKK TLVFYKGRAP RGEKSNWVMH EYRIHSKSSS FRTNKDEWVV CRVFRKSAGA  180
KKFPSSSHIR ALNLNPFSLE VGPSIMPPPP MMHLADPAAA AHFLYGRNYM MNPSEVAEVT  240
RVLRGGGPTN VNVMNMNLPM QYSHLNNPVA GGGGEGFTIS GLNLNLGGTV ATTTAQAQQS  300
LLRPMMPPPQ PSPAHTIAQV HHDFSSNMVT PNIALAADNV GYGGEVASAN SHGNRYMGMD  360
HCMDLDNYWP SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-562618219174NAC domain-containing protein 19
3swm_B4e-562618219174NAC domain-containing protein 19
3swm_C4e-562618219174NAC domain-containing protein 19
3swm_D4e-562618219174NAC domain-containing protein 19
3swp_A4e-562618219174NAC domain-containing protein 19
3swp_B4e-562618219174NAC domain-containing protein 19
3swp_C4e-562618219174NAC domain-containing protein 19
3swp_D4e-562618219174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G140100.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150363e-93AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028199935.10.0NAC domain-containing protein 59-like isoform X3
SwissprotQ9FLJ23e-81NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A445H5F30.0A0A445H5F3_GLYSO; NAC domain-containing protein 100
TrEMBLK7M6P20.0K7M6P2_SOYBN; Uncharacterized protein
STRINGGLYMA14G20276.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-112NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]