PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G179600.1.p
Common NameGLYMA_14G179600, LOC100776421
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 261aa    MW: 28515.8 Da    PI: 7.0421
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G179600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.12.7e-3056111359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +vrY+eC+kNhA+s GghavDGC+Efm++ ge+gt +a+ CaAC+CHRnFHR+e + 
  Glyma.14G179600.1.p  56 AVRYRECQKNHAVSFGGHAVDGCCEFMAA-GEDGTLEAVICAACNCHRNFHRKEIDG 111
                          79**************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.0E-2857109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2658109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2058111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.04959108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.69E-21183258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-32186259IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-25197253IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEFDEQEEHE EEEMVMPEPA AVSAPPSYDS LGNSGAMSKL GGGEGRKTAL GAAAAAVRYR  60
ECQKNHAVSF GGHAVDGCCE FMAAGEDGTL EAVICAACNC HRNFHRKEID GEITSFHYRA  120
QPPPPPMHHH HQFSPYYHHR VPQHPAAAGY LHHHLTPPMS QHRPLALPAA ASGGGLSREE  180
EDMSNPSSSG GGGGGSKKRF RTKFTQEQKD KMLAFAEQLG WRIQKHDESA VEQFCAETNV  240
KRNVLKVWMH NNKSTLGKKP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-281962551675ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G179600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544235.10.0zinc-finger homeodomain protein 2
SwissprotA2Z2591e-73ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH51e-73ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
SwissprotQ9SB613e-74ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLI1MAY50.0I1MAY5_SOYBN; Uncharacterized protein
STRINGGLYMA14G35770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-66homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]