PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.14G202300.2.p

Common Name

GLYMA_14G202300, LOC100813489

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 224aa MW: 23807.3 Da PI: 9.1777

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G202300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7.3e-42	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l Glyma.14G202300.2.p 20 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQTL 109 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +ael+++++e Glyma.14G202300.2.p 110 QAELNAIRAE 119 ***99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.529	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-42	20	117	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MGRKHFYGPT PGTTLNTVTP CAACKLLRRR CAEECPFSPY FSPHEPQKFA AVHKVFGASN 60 VSKMLMEVPE GQRADAANSL VYEANLRLRD PVYGCMGAIS ALQQQVQTLQ AELNAIRAEI 120 LKYKYREAAS IISSQHVALV SSADAISIAA IPADSSQGLS QPHAHPHPPP PKPLPSPLPK 180 PLPSPSIILS SLSSSSASSV YTPPKSTMSL GSISTTANVP YFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	13	131	4	122	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	13	131	4	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G202300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-167	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003544924.1	1e-161	LOB domain-containing protein 13 isoform X1
Refseq	XP_006596459.1	1e-161	LOB domain-containing protein 13 isoform X2
Refseq	XP_028199297.1	1e-161	LOB domain-containing protein 13-like isoform X1
Refseq	XP_028199298.1	1e-161	LOB domain-containing protein 13-like isoform X2
Swissprot	Q9AT61	1e-74	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0B2PI30	1e-160	A0A0B2PI30_GLYSO; LOB domain-containing protein 13
TrEMBL	I1MBJ6	1e-160	I1MBJ6_SOYBN; Uncharacterized protein
TrEMBL	K7M865	1e-160	K7M865_SOYBN; Uncharacterized protein
STRING	GLYMA14G38280.2	1e-161	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-76	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Glyma.14G202300.2.p
Entrez Gene	100813489

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]