PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G204400.5.p
Common NameGLYMA_14G204400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 719aa    MW: 79799.7 Da    PI: 7.817
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G204400.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.7e-19311411199
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk++ae++   +++ e+  l+++d +g+ W++++++  +++s++yvl+ G     +a +L++gD+v+F++++
  Glyma.14G204400.5.p 311 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLQFKDVKGNDWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLNAGDIVTFSRID 399
                          99**************************555556677***************9989999999***9.********************987 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                            ++++v++ +r+
  Glyma.14G204400.5.p 400 -PGGKFVMGYRRA 411
                          .677678887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-29308414IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-20308410IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-23309410No hitNo description
PROSITE profilePS5086310.701311412IPR003340B3 DNA binding domain
PfamPF023621.8E-16311411IPR003340B3 DNA binding domain
SMARTSM010191.3E-20311411IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MNVSCKNGYA REWKKGWPLR SGGFARLCHK CGSAYENLIF CQKFHLYQTG WRECSFCNKT  60
VHCGCIVSSS MFEYLDYGGI GCATCVKTSQ LNLIRDTKNT IGSVRSIKNN ARNRHTEHID  120
GRLLVDSAGK GNLMLLRRDV EASESIRWPR AERDGIDSCI GPNRQEDRRF SNVVKLSGHS  180
LNFTTLDHNR PTWETQTMHK SSSLNMSLGT SSGNSVQPSA LDIAERRLED KASFCPFPQG  240
QRSLSISKSL MDGITMNLED SKGVISQERV ARPPANGKPK NLLHFRYWPR ITGQELEKLS  300
GDLKSTIVPL FEKVLSASDA GRIGRLVLPK SCAEAYFPPI SQSEGLPLQF KDVKGNDWTF  360
QFRFWPNNNS RMYVLEGVTP CIQAMQLNAG DIVTFSRIDP GGKFVMGYRR ASDSMDTQVD  420
ASTFAHSNGF ATKEATFSGA TANLHSGKSY PDLLQTRNGN GEPYLNGCSE HLRFGTGTAD  480
CLQTENCEMV NNDLLQQTIS VSEKTLNIAP KSKRLLTHNE DAVELRITWE EAQDLLHPPP  540
STMPSVETIE DKEFEEFEEP PVFGKGTTIN DPPSGSLSSA SEKMSSMDLE NIPVTSKDSK  600
KRRIMEKLDS SAGATTKHPR HCSGCTCILC IQPPSGKGRH KPTCTTVRRQ FKTLMKRKKQ  660
RESDATQNDQ IHHSDEGDTH GASREGAIAS NLENEGSLNR MDELGTGQID LNSHPDHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-652894182131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G204400.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1419237e-43AC141923.27 Medicago truncatula clone mth2-7f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544336.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_006596467.10.0B3 domain-containing transcription repressor VAL1
TrEMBLA0A0R0GQD60.0A0A0R0GQD6_SOYBN; Uncharacterized protein
STRINGGLYMA14G38492.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-151high-level expression of sugar-inducible gene 2