PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G218700.1.p
Common NameGLYMA_14G218700, LOC100782665
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 415aa    MW: 45313.7 Da    PI: 9.6449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G218700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05176198223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           C++Cg++F+  ++L+ H+ + H
  Glyma.14G218700.1.p 176 ACSHCGEVFPKMESLELHQAVrH 198
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280175198IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829175203IPR007087Zinc finger, C2H2
SuperFamilySSF563997.96E-27200410No hitNo description
Gene3DG3DSA:3.90.228.104.7E-16202410IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MALLTSLPEQ FSSTPKRHKR KPQQQQQKQK QKQKQKQKQK PASSWDQIKN LLTCKQMEES  60
RVHDPSKITG YSKLGSSCSS ICSFRDVVHG NTRVVHRSDN SSPESSSLGQ ETNGLLTRKP  120
VTTTTTRSAK SNGGATCTSS SSSSRGMQFR KLSGCYECHM IIDPSRLPIA RSTVCACSHC  180
GEVFPKMESL ELHQAVRHAV SELGPEDSGR NIVEIIFKSS WLKKDNPICK IERILKVHNT  240
QRTIQRFEEC RDTVKNRALG STKKNPRCAA DGNELLRFHC TTLTCALGAR GSSSLCASVP  300
GCSVCTIIRH GFQGGCGGGG DHARAKGVRT TASSGRAHDS VVCGDATRRA MLVCRVIAGR  360
VKRVVEDAPS EEEHVSYDSV AGYAGIYSNL EELVVFNPKA ILPCFVVIYK VPLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11421PKRHKRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.59770.0hypocotyl| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G218700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545035.10.0uncharacterized protein LOC100782665
TrEMBLI1MC450.0I1MC45_SOYBN; Uncharacterized protein
STRINGGLYMA14G40450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Representative plantOGRP6611439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-168C2H2-like zinc finger protein