PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G004100.2.p

Common Name

GLYMA_15G004100, LOC100809585

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 267aa MW: 29500.2 Da PI: 8.0432

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G004100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Glyma.15G004100.2.p 106 FSCNYCQRKFYSSQALGGHQNAH 128 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.84E-6	103	133	No hit	No description
PROSITE profile	PS50157	11.427	106	133	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDLILSESRP SENLSIPFLE TPRPCSKPQV PSMDTQKEKK EEDKEQPHES APHLALLDLS 60 LPSKDSGGDD DESKPLNLIN CIDTNLSMNS SESSHGHGDE LEPRIFSCNY CQRKFYSSQA 120 LGGHQNAHKR ERTLAKRGHK AGAAVSIDFA RRYSNISMAS LPLHGSYNRS LGIQAHSMIN 180 KPSYQTQTPF SGLSRSHAQK RLMFSQPPIG AESESSLTGG IPVPRLGKFS PRLVPEGFGG 240 YWLDSINHLK TKQEDQLHKL DLSLKL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in the shoot apex, including the apical meristem, developing leaves and developing vascular system. {ECO:0000269\|PubMed:10794528, ECO:0000305\|PubMed:8980531}.

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G004100.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-132	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003546916.1	0.0	zinc finger protein 1
Refseq	XP_028203637.1	0.0	zinc finger protein 1-like
Swissprot	Q42485	6e-35	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	A0A0B2QQI7	0.0	A0A0B2QQI7_GLYSO; Zinc finger protein 1
TrEMBL	A0A445GLZ0	0.0	A0A445GLZ0_GLYSO; Zinc finger protein 1
TrEMBL	K7M8Q8	0.0	K7M8Q8_SOYBN; Uncharacterized protein
STRING	GLYMA15G00645.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	5e-37	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Glyma.15G004100.2.p
Entrez Gene	100809585

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]