PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G005100.1.p
Common NameGLYMA_15G005100, LOC100809223
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 297aa    MW: 33270.7 Da    PI: 4.706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G005100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12119165455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h + Er+RR+++ s+f  L   +P +     kK++Ka +L++A++Y+k+Lq
  Glyma.15G005100.1.p 119 NHIMSERNRRQELTSKFIALAATIPGL-----KKMDKAHVLREAINYVKQLQ 165
                          7999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.104115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.03E-12118169No hitNo description
SuperFamilySSF474597.33E-17118181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16119177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEENPWGSWS ADMEVDDEVV NESLCHTNLF DEEFLRDILQ RPQEGAPNLN NSSIMSSLCA  60
QDIKPTTLFP TTYILSFDNS AALLPTETDR DFSSSKLPSS NSRANHGIKK PGSASESLNH  120
IMSERNRRQE LTSKFIALAA TIPGLKKMDK AHVLREAINY VKQLQERVEE LEEDIQKNGV  180
ESEITITRSH LCIDDGTNTD ECYGPNEALP EVEARVLGKE VLIKIHCGKH YGILLEVMSE  240
LERLHLYISA SNVLPFGNTL DITIIAQMGD KYNLVAKDLV KELRQVAMMK SCYVQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.402880.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G005100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937070.0BT093707.1 Soybean clone JCVI-FLGm-14A22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547571.10.0transcription factor bHLH18
TrEMBLK7M8R80.0K7M8R8_SOYBN; Uncharacterized protein
STRINGGLYMA15G00750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15398711
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-45bHLH family protein