PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G011100.1.p

Common Name

GLYMA_15G011100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 73aa MW: 8225.22 Da PI: 7.6771

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G011100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.4e-05	2	40	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +R +++ ++++ L++l+ + +K + ++L +A+ YI+ L Glyma.15G011100.1.p 2 QRKEKLGERIAALQQLVSPF-----GKTDTTSVLHEAIGYIRFL 40 67788999*******998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.833	1	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.89E-11	2	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	2	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MQRKEKLGER IAALQQLVSP FGKTDTTSVL HEAIGYIRFL HDQVPVLCSP YLESSPSSYH 60 QNQHDPSSNT WR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G011100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091865	1e-116	BT091865.1 Soybean clone JCVI-FLGm-9A23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014618881.1	2e-34	transcription factor bHLH113 isoform X1
Refseq	XP_025979969.1	2e-34	transcription factor bHLH113 isoform X2
Swissprot	Q9LT67	3e-24	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A0R0G3E0	3e-47	A0A0R0G3E0_SOYBN; Uncharacterized protein
STRING	GLYMA15G01381.1	8e-37	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10321	21	29
Representative plant	OGRP1342	13	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.15G011100.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]