PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G027400.10.p

Common Name

GLYMA_15G027400

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 230aa MW: 25984.2 Da PI: 9.8253

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G027400.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.8	5.6e-31	109	165	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+ +k +k rkpylheSRh+hAl+R+Rg gGrF Glyma.15G027400.10.p 109 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRKPYLHESRHQHALKRARGAGGRF 165 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-34	107	168	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.164	108	168	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.0E-26	110	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.3E-24	111	133	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	113	133	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.3E-24	142	165	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSRSLSSKVD VLPQQCHNSK TFNFQFQEQD ASSTKSTDQS YPEVGQISVQ HSSTDSTLIR 60 NEGKSMGCVI RSFMGSQDFP FPPPLLDHRP ILPVETAPVR IPLQLDFAEE PIYVNSKQYH 120 AILRRRQYRA KLEALNKPIK DRKPYLHESR HQHALKRARG AGGRFLNTKK QLQSNHTPGN 180 IAESKMHHIE NYRDGADVSY AFNSDARNMQ NDAADKGGGT TQQPLFVYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-21	109	171	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269\|PubMed:11250072}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G027400.10.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235312	1e-143	AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence.
GenBank	EU028314	1e-143	EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006597204.1	1e-165	nuclear transcription factor Y subunit A-3 isoform X3
Swissprot	Q9LVJ7	3e-32	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	A0A0R0G4B7	1e-171	A0A0R0G4B7_SOYBN; Uncharacterized protein
TrEMBL	K7M973	1e-171	K7M973_SOYBN; Uncharacterized protein
STRING	GLYMA15G03175.1	1e-165	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14020.1	1e-34	nuclear factor Y, subunit A6

Link Out ? help Back to Top
Phytozome	Glyma.15G027400.10.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]