PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G027400.8.p
Common NameGLYMA_15G027400, LOC100803893
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 190aa    MW: 21370.3 Da    PI: 9.7792
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G027400.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.33.9e-3169125158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVN+KQy++Il+RRq Rakle+ +k  +k rkpylheSRh+hAl+R+Rg gGrF
  Glyma.15G027400.8.p  69 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRKPYLHESRHQHALKRARGAGGRF 125
                          69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-3467128IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.16468128IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-2670125IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-247193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607393IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-24102125IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGCVIRSFMG SQDFPFPPPL LDHRPILAHI ACHYADPCYS GLVAAAYSPQ SKPVETAPVR  60
IPLQLDFAEE PIYVNSKQYH AILRRRQYRA KLEALNKPIK DRKPYLHESR HQHALKRARG  120
AGGRFLNTKK QLQSNHTPGN IAESKMHHIE NYRDGADVSY AFNSDARNMQ NDAADKGGGT  180
TQQPLFVYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2169131264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G027400.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353121e-144AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence.
GenBankEU0283141e-144EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597200.11e-141nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_006597201.11e-141nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_014622861.11e-141nuclear transcription factor Y subunit A-3 isoform X1
SwissprotQ9LNP69e-41NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A0R0FVT31e-140A0A0R0FVT3_SOYBN; Uncharacterized protein
TrEMBLA0A0R0G4691e-140A0A0R0G469_SOYBN; Uncharacterized protein
STRINGGLYMA15G03175.11e-115(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.44e-43nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ma X, et al.
    Overexpression of wheat NF-YA10 gene regulates the salinity stress response in Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 86: p. 34-43
    [PMID:25461698]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  4. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]