PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G027400.9.p

Common Name

GLYMA_15G027400, LOC100803893

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YA

Protein Properties

Length: 255aa MW: 28590.1 Da PI: 9.4298

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G027400.9.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	98.5	6.8e-31	134	190	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+ +k +k rkpylheSRh+hAl+R+Rg gGrF Glyma.15G027400.9.p 134 EEPIYVNSKQYHAILRRRQYRAKLEALNKP-IKDRKPYLHESRHQHALKRARGAGGRF 190 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-34	132	193	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.164	133	193	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.2E-26	135	190	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.8E-24	136	158	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	138	158	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	6.8E-24	167	190	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSRSLSSKVD VLPQQCHNSK TFNFQFQEQD ASSTKSTDQS YPEVGQISVQ HSSTDSTLIR 60 NEGKSMGCVI RSFMGSQDFP FPPPLLDHRP ILAHIACHYA DPCYSGLVAA AYSPQSKPVE 120 TAPVRIPLQL DFAEEPIYVN SKQYHAILRR RQYRAKLEAL NKPIKDRKPY LHESRHQHAL 180 KRARGAGGRF LNTKKQLQSN HTPGNIAESK MHHIENYRDG ADVSYAFNSD ARNMQNDAAD 240 KGGGTTQQPL FVYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	6e-21	134	196	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G027400.9.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235312	1e-143	AC235312.1 Glycine max strain Williams 82 clone GM_WBb0071J06, complete sequence.
GenBank	EU028314	1e-143	EU028314.1 Glycine max clone BAC gmw1-6b18 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006597203.1	0.0	nuclear transcription factor Y subunit A-3 isoform X2
Swissprot	Q93ZH2	5e-42	NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBL	A0A0R0G3B4	0.0	A0A0R0G3B4_SOYBN; Uncharacterized protein
TrEMBL	A0A0R0G469	0.0	A0A0R0G469_SOYBN; Uncharacterized protein
STRING	GLYMA15G03175.1	1e-158	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-44	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Glyma.15G027400.9.p
Entrez Gene	100803893

Publications ? help Back to Top
Ma X, et al. Overexpression of wheat NF-YA10 gene regulates the salinity stress response in Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 86: p. 34-43 [PMID:25461698]