PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G030200.4.p
Common NameGLYMA_15G030200, LOC100810283
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 260aa    MW: 29901.7 Da    PI: 6.5155
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G030200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.76e-2677167190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++  +++++    + + tr gC+a++++ ++++gkw+vtk+++eH+H+
  Glyma.15G030200.4.p  77 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYLHRKDR-VlpPPPATREGCQAMIRLALRDRGKWVVTKFVKEHTHK 165
                          6******************************************99883333.2448899******************************* PP

                 FAR1  89 la 90 
                          l+
  Glyma.15G030200.4.p 166 LM 167
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-2377167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDHQSGQGFD SDDSDLDMQA EISDKHEKVD EFSKNLEICG GEDEMFVEQP VADISTDIEA  60
VEPFIGMEFN SREEAREFYI AYGRRIGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK  120
YLHRKDRVLP PPPATREGCQ AMIRLALRDR GKWVVTKFVK EHTHKLMSPS KVPCRGSGKH  180
LVSEDEKDKR IRELSLELYN ERQKCKRRCA AYEEQLNVIL NDLEKHTEHI SKKVAAVVRS  240
IREIEEEKSD SDGGQLEPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194710.0cotyledon| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G030200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546989.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_006597226.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_028203073.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_028203074.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445GNF10.0A0A445GNF1_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform A
TrEMBLK7M9950.0K7M995_SOYBN; Uncharacterized protein
STRINGGLYMA15G03470.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-43FAR1 family protein