PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G032700.2.p
Common NameGLYMA_15G032700, LOC100806368
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 412aa    MW: 45565.8 Da    PI: 6.0561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G032700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12345390655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Glyma.15G032700.2.p 345 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 390
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17342403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-13343394No hitNo description
Gene3DG3DSA:4.10.280.102.8E-16344403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14345395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9345390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MESDLEQQPQ VNSSGLTRYR SAPSSYFSNI IDREFYEHVF NRPSSPETER VFSRFVNSLN  60
SEEEDSLHHK LSTDSSSSAA VKEEVNQQDQ GINEEHVAVA ALQQSNNNIN NYNNNNNNNY  120
SASHNFYQSS SSKPPLPNQN PNLPSAMEQG SFSMGLRHSG NNSNLTRHSS SPAGLFSQIN  180
IENVYAGVRG MGSLGAVNNS IEDAKFSSSR RLKNQPNYSS SGRMSSIAEI GDKGYRESSP  240
DSEAFADGND FMAGFQVGHW DDTAMMSDNV GGLKRFSEED SKPFSGLNAV ETQNETGQTH  300
APLAHQLSLP NTSAEMAAIE KFLQFSDSVP CKIRAKRGCA THPRSIAERV RRTKISERMR  360
KLQDLVPNMD KQTNTADMLD LAVDYIKDLQ KQVQTLSDCH AKCTCSHEKQ Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.332770.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G032700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954350.0BT095435.1 Soybean clone JCVI-FLGm-25M5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547061.10.0transcription factor bHLH122 isoform X2
TrEMBLI1MD930.0I1MD93_SOYBN; Uncharacterized protein
STRINGGLYMA15G03740.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.12e-72bHLH family protein