PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G037300.1.p
Common NameGLYMA_15G037300, LOC100780881
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 721aa    MW: 79710.7 Da    PI: 8.3592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G037300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.9e-08620669147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Glyma.15G037300.1.p 620 RRPFSVAEVEALVQAVEKLGTGRWRDVKLHAFdnaKHRTYVDLKDKWKTL 669
                          6789999***********************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.06E-8420511IPR029071Ubiquitin-related domain
PROSITE profilePS500538.502425495IPR000626Ubiquitin domain
PROSITE profilePS5129416.741615674IPR017930Myb domain
SMARTSM007177.2E-8619672IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10620670IPR009057Homeodomain-like
SuperFamilySSF466897.09E-16621702IPR009057Homeodomain-like
CDDcd116602.12E-17621671No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MVLQKRLDYS FYGYHVPTKR RATRSAKRRA TFQRRLEDNQ MCAFDLLATI ADNLLQEKQN  60
PTISSDRSSE KDRDGFSKVE CQDANKPFKT ELSDEASCDR KCQHEFVREG CPDANKPFKA  120
ELSDEGSSDR KCFSNISSQL YNQNCCLKEL LQHEIDGHSC IASIVTSSSC SEKIVAERLV  180
DGKGHNGVEN LASKVELGSS GCLESSGCKL DGDVSKVKDG KVGKVPIDTG TGMCCFEDPL  240
DEKPPALISS CGNAKMSGYD DSKPQSSLSK GCDNVLVDSR DDDENFSGYA HPSTKINSFK  300
QITCIDDRKI KKTLDSKYHK VSQESKHDIL SNSVLDGNLK SVYSSRKNYY KSQRSQMCIP  360
FKKRKLFNCS SSDTNSNGYI RSDDTCYSPK NDTNQSVSCS SSGMSKDHGT SSLGHSALRS  420
RDSHVKLRIK SFRVPELFIE IPETATVGSL KRTVMEAVTA VLGGGLRVGV ILHGKKVRDD  480
SKTLLQTGIS HDNHLDALGF ALEPNCSQNR SSACATTDSL CVPGADMHQP LIGYPSSRAA  540
IHQRIQGFSN MLAEHQATGL GNLVESDHDS APSPINTSGE KNLTDSKELI TVPEMGMEAL  600
AVLPVHQKSK RTEIAPRRIR RPFSVAEVEA LVQAVEKLGT GRWRDVKLHA FDNAKHRTYV  660
DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAYW SQQQTKQQLK HHSTKPCLLL  720
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-566047101107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532480.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G037300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597267.10.0telomere repeat-binding protein 2 isoform X1
RefseqXP_028202453.10.0telomere repeat-binding protein 2-like isoform X1
SwissprotQ6R0E31e-123TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A445GNX40.0A0A445GNX4_GLYSO; Telomere repeat-binding protein 5 isoform B
TrEMBLK7M9E20.0K7M9E2_SOYBN; Uncharacterized protein
STRINGGLYMA15G04200.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-102TRF-like 2