PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G039300.1.p

Common Name

GLYMA_15G039300, LOC100775899

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 305aa MW: 33103 Da PI: 10.0933

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G039300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.5	1.5e-38	69	127	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Glyma.15G039300.1.p 69 GVLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKHK 127 5689****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	54	120	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.6E-33	70	125	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	71	125	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	73	109	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MVFSSIPVYS DPPNWQQQQQ NQHQANGINS PQLLSPLPQP PQAPHVGVEA GQTRSGPMAD 60 RAKIPAQEGV LKCPRCESTN TKFCYFNNYS LSQPRHFCKT CRRYWTRGGA LRNVPVGGGC 120 RRNKKHKRSR SKSPVSTDKP SLPNSTSAIP ELIGRFPQPF IASLQSMNRY GVGNTGVNLR 180 EIQAQNGSQM GFQIGGHGNG TSSVATAGGG VEQWRFQQFP FLNGFESTLA VSNSYPFQSE 240 SVEGLVGDIA ASSRATQLPA RVKMEYNGGL NLSRSPLSVS ENSNHYYSWT DLSGLVSSSA 300 SHLL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.44895	0.0	hypocotyl\| meristem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G039300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003547369.1	0.0	dof zinc finger protein DOF3.6
Refseq	XP_028202845.1	0.0	dof zinc finger protein DOF3.6-like
TrEMBL	A0A445GNZ8	0.0	A0A445GNZ8_GLYSO; Dof zinc finger protein DOF3.6
TrEMBL	I1MDG2	0.0	I1MDG2_SOYBN; Uncharacterized protein
STRING	GLYMA15G04430.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-40	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Glyma.15G039300.1.p
Entrez Gene	100775899