PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G057900.2.p
Common NameGLYMA_15G057900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 22167.2 Da    PI: 9.1275
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G057900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF862.2e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n   rqvtfskRr+g++KKA+ELS+LCdae+a+i+fs tgkl+ey+s
  Glyma.15G057900.2.p  9 KKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATGKLFEYAS 59
                         689**********************************************86 PP
2K-box19.93.1e-08971562483
                K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                          L+keie   +e+ +l  e+L+ L++keLq+Le+ L++  ++i ++K+  l+e+ ++l++ 
  Glyma.15G057900.2.p  97 LRKEIEDKTNELSQLNEEELQGLKIKELQKLEDILQRRWTTISKTKEAKLMEENQKLKQS 156
                          8999999999******************************************99988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.058161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-30277IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002656.80E-38374No hitNo description
PRINTSPR004045.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.92487178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MTRKKIPIKK IDNINARQVT FSKRRKGLFK KAQELSTLCD AEIALIVFSA TGKLFEYASS  60
SMQQTLERRN QHSGIQGLDN PSIGQQLGSD SFGMLPLRKE IEDKTNELSQ LNEEELQGLK  120
IKELQKLEDI LQRRWTTISK TKEAKLMEEN QKLKQSFLQE QRQSYESFTC SSSEFPPDNG  180
SSDTSLKLGL SLFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20173173MEF2C
5f28_B5e-20173173MEF2C
5f28_C5e-20173173MEF2C
5f28_D5e-20173173MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G057900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150389e-67AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597363.11e-135MADS-box protein JOINTLESS
RefseqXP_006597364.11e-135MADS-box protein JOINTLESS
SwissprotQ9FUY67e-53JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A0R0FWV71e-137A0A0R0FWV7_SOYBN; Uncharacterized protein
STRINGGLYMA15G06302.21e-134(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]