PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G058000.1.p
Common NameGLYMA_15G058000, LOC100779995
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24588.4 Da    PI: 10.1759
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G058000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.45.1e-25959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+i+n + rqvtfskR+ g++KKA ELS LCd e+a+i+fs+ gkl++y+s
  Glyma.15G058000.1.p  9 KKIDNVTARQVTFSKRKSGLFKKARELSLLCDSEIALIVFSPGGKLFDYAS 59
                         68***********************************************86 PP
2K-box41.84.7e-15871711599
                K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          e+l+ ++a L+ke     re R+l Ge+L+ L l+eLq+Le++L +sl+++ + K e ++++i+ l++k ++l e+n+ ++++++
  Glyma.15G058000.1.p  87 EQLRCNYADLNKEFGDRIREMRQLNGEELQGLALRELQKLEERLVSSLNRVYKAKVENFTREIDILKQKGNKLMEDNRLMKQRIK 171
                          566677888888887777888*********************************************************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.609161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-29379IPR002100Transcription factor, MADS-box
CDDcd002653.03E-36369No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-25323IPR002100Transcription factor, MADS-box
PfamPF003194.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1386170IPR002487Transcription factor, K-box
PROSITE profilePS5129710.79986182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVRRKIPIKK IDNVTARQVT FSKRKSGLFK KARELSLLCD SEIALIVFSP GGKLFDYASS  60
SMQKVIERHI LWSELNLEKL DQSCPTEQLR CNYADLNKEF GDRIREMRQL NGEELQGLAL  120
RELQKLEERL VSSLNRVYKA KVENFTREID ILKQKGNKLM EDNRLMKQRI KPRNEICSVQ  180
RHEHEQGRSF DTSLTLGLSF PAGSKYRVSE Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-20174174MEF2 CHIMERA
6byy_B4e-20174174MEF2 CHIMERA
6byy_C4e-20174174MEF2 CHIMERA
6byy_D4e-20174174MEF2 CHIMERA
6bz1_A5e-20174174MEF2 CHIMERA
6bz1_B5e-20174174MEF2 CHIMERA
6bz1_C5e-20174174MEF2 CHIMERA
6bz1_D5e-20174174MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.96460.0flower| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G058000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-53AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547095.11e-154MADS-box protein JOINTLESS
RefseqXP_006597365.11e-154MADS-box protein JOINTLESS
SwissprotQ9FUY67e-54JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLK7M9U61e-153K7M9U6_SOYBN; Uncharacterized protein
STRINGGLYMA15G06314.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2666023
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-55MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]