PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G061400.1.p
Common NameGLYMA_15G061400, LOC100790824
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 370aa    MW: 41696.7 Da    PI: 7.9354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G061400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12193240355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L +A++Y+k++q
  Glyma.15G061400.1.p 193 QDHIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGEAIKYLKQMQ 240
                          5799************************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-16194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-17194252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10194240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-12195244No hitNo description
SMARTSM003534.1E-14196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MWLSFFHEFG DISLIASAVF HCMRSSHMEI SSIRGLPELG IIEDPNFLHQ WQLNSIDTTS  60
LKGAAFGDIL QKHSFSDNSN FNPKTSMETS QTGIERYAKQ LGDNSWNHNK SQQQTPETQF  120
ASCSNLLSFV NTNYTSELGL VKPKVEMACP KIDNNALADM LISQGTLGNQ NYIFKASQET  180
KKIKTRPKLS QPQDHIIAER KRREKLSQRF IALSALVPGL KKMDKASVLG EAIKYLKQMQ  240
EKVSALEEEQ NRKRTVESVV IVKKSQLSSD AEDSSSETGG TFVEALPEIE ARFWERNVLI  300
RIHCEKNKGV IEKTISEIEK LHLKVINSSA LTFGSFILDI TIIAQMDMEF CMTVKDLVRS  360
LRSAFSYFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14191250564Transcription factor MYC2
5gnj_B1e-14191250564Transcription factor MYC2
5gnj_E1e-14191250564Transcription factor MYC2
5gnj_F1e-14191250564Transcription factor MYC2
5gnj_G1e-14191250564Transcription factor MYC2
5gnj_I1e-14191250564Transcription factor MYC2
5gnj_M1e-14191250564Transcription factor MYC2
5gnj_N1e-14191250564Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERKRRE
2199204RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.1510.0seed coat
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO33997760.0
Function -- GeneRIF ? help Back to Top
  1. GmbHLHm1 influences nodule development and activity and is linked to a novel mechanism for NH4(+) transport common to both yeast and plants.
    [PMID: 24707045]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G061400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0697380.0AF069738.1 Glycine max symbiotic ammonium transporter (SAT1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597021.10.0transcription factor bHLH25-like isoform X1
TrEMBLI1ME410.0I1ME41_SOYBN; Uncharacterized protein
STRINGGLYMA15G06680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-60bHLH family protein
Publications ? help Back to Top
  1. Chiasson DM, et al.
    Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(13): p. 4814-9
    [PMID:24707045]
  2. Kaiser BN, et al.
    Characterization of an ammonium transport protein from the peribacteroid membrane of soybean nodules.
    Science, 1998. 281(5380): p. 1202-6
    [PMID:9712587]