PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G069300.1.p
Common NameGLYMA_15G069300, LOC100804245
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 476aa    MW: 52943.4 Da    PI: 10.4363
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G069300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-08741237
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                         grW t+E++ll  av ++G+++W+ +a+++   Rt+
  Glyma.15G069300.1.p  7 GRWGTWEELLLGGAVLRYGTRNWNVVAAELR-ARTA 41
                         8******************************.5553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002495.5E-7757IPR001005SANT/Myb domain
SuperFamilySSF473705.49E-18264369IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.3E-14265370IPR001487Bromodomain
SMARTSM002971.7E-18266370IPR001487Bromodomain
CDDcd043692.93E-14271365No hitNo description
PfamPF004392.2E-11274354IPR001487Bromodomain
PROSITE profilePS500149.656281351IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGTEVMGRWG TWEELLLGGA VLRYGTRNWN VVAAELRART ACPYTITPEV CKAKYEDLQQ  60
RYTGNKAWFE ELRKTRVAEL KRALELSEDS IGSLESKLES LEAGKNEKKD DCHVDKGSAG  120
PKLHVASQKL ERVESSTKET SKDGLSAGSF THETRTNWSP ECPVPAGFAE DMETKPEVSH  180
STEQAKVLNV DELTRTIYEG QGGSFKKRRG KRKRKDCGRN MKEASVGESD LLDSADVVSW  240
CKESSTSNCG EVAKSCGVDD QNRNLKKDRV EDMMEILDFI FETKGASAFQ RRLDSQKRGR  300
YKKMILQHMD FDTIRSRISS QTIKSSVELF RDLLLLTNNA LVFYSKSTRE YKTALLLRGI  360
VTKKMRESLK GTSNKATTQA TNFPIKLLVH NPHVKPRSVR PGNRKIVAKA VGGKNSASGE  420
SHGTKKPSKV DSPSSVESLT MKKKGFGRPK KVGRGAAAGQ RPAMPMKGKK RVRTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210KKRRGK
2207215RRGKRKRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.368270.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G069300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547134.10.0uncharacterized protein LOC100804245
TrEMBLI1MEC50.0I1MEC5_SOYBN; Uncharacterized protein
STRINGGLYMA15G07500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Representative plantOGRP829569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.15e-20DNA-binding bromodomain-containing protein