PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G082900.1.p
Common NameGLYMA_15G082900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 251aa    MW: 27694.6 Da    PI: 4.8894
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G082900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.6e-1526117187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +W+++   +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ +  + + ss++p++++l
  Glyma.15G082900.1.p  26 CWSEEASATLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSASNGTLSSSWPFYERL 115
                          7****************************************99999*************************99999889999*******9 PP

             trihelix  86 ea 87 
                          +a
  Glyma.15G082900.1.p 116 DA 117
                          85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2524118No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MPDFHDSLST TPPPQPSRPV PVREDCWSEE ASATLVDAWG RRYLELNRGN LRQKDWQDVA  60
DAVNALHGHT KKTHRTDVQC KNRIDTIKKK YKIEKARVSA SNGTLSSSWP FYERLDALIG  120
PNFSAKKSTS PPSPSPPVAL PLLPHRKNQN QNPSSSPAIS VPPTAVALPQ KRSAAAAMDE  180
GYFRRNYSAV AAAAAAAEAD EEEDEDEAED LEEEEECEEE GRGSEDEWVA RGFFSEFLFG  240
GKRKIDCLGL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.96410.0pod| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G082900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028204507.11e-165trihelix transcription factor ASIL2-like
TrEMBLA0A0R0G6P90.0A0A0R0G6P9_SOYBN; Uncharacterized protein
STRINGGLYMA15G08890.21e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-39sequence-specific DNA binding transcription factors