PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G091000.3.p
Common NameGLYMA_15G091000, LOC100796447
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 818aa    MW: 90862.9 Da    PI: 6.7987
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G091000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-2446147199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Glyma.15G091000.3.p  46 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 133
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Glyma.15G091000.3.p 134 --WNEKNQLLLGIRRA 147
                          ..8899999****997 PP
2Auxin_resp120.51.3e-39172255183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  Glyma.15G091000.3.p 172 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 255
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-4931175IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-4338161IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-2245146No hitNo description
PfamPF023623.1E-2346147IPR003340B3 DNA binding domain
SMARTSM010191.8E-2546148IPR003340B3 DNA binding domain
PROSITE profilePS5086313.1446148IPR003340B3 DNA binding domain
PfamPF065078.7E-35172255IPR010525Auxin response factor
PfamPF023092.9E-6682769IPR033389AUX/IAA domain
SuperFamilySSF542778.5E-6684759No hitNo description
PROSITE profilePS5174521.845684768IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MTMHADVETD EVYAQMTLQP LNPQEQNEAY LPAELGTASK QPTNYFCKTL TASDTSTHGG  60
FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHGNEWKFRH IFRGQPKRHL LTTGWSVFVS  120
AKRLVAGDSV LFIWNEKNQL LLGIRRANRP QTVMPSSVLS SDSMHLGLLA AAAHAAATNS  180
RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGIGD  240
LDPVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSSFPL RLKRPWPPGL  300
PSFHAGMKDD DFGLNSPLLW LRDTDRGLQS LNFQGIGVNP WMQPRFDPTV LNMQTDMYQA  360
AAAAAVQDMR SLDPSKQLSA SLLQFQQPQN FPNRTAALMQ AQMLQKSQPQ QIFGNNQENQ  420
HSPQSQPQTQ AHLQQHLQHQ HSFNSQHHHH QQQQQQQQVV DNQQISSAVS TMSQLFSAPQ  480
PQSPPMQAIS SLCQNFSNSN GNSVTTIVSP LHSILGSFPQ DETSHLLNLP RTSSWIPIQN  540
SSGWPSKRVA VDPLLSSGAS HCVLPQVDQL GQPHSTMSLN AITLPPFPGR ESSIDQEGSN  600
DPQNHLLFGV NIDPSSLLMP NGMSSLKGVS GNNNSSTLPY QSSNYLNTTT GTDSSLNHGM  660
TPNIGDSGFL HCPEDAGQGN PLNKTFVKVY KSGSFGRSLD ITKFSSYHEL RGELARMFGL  720
EGELEDPVRS GWQLVFVDRE NDVLLLGDGP WPEFVNSVWC IKILSPQEVQ QMGNNGLELL  780
NSVPNQRLSN GICDDYVSRQ DPRNLSTGIT TVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1241276113388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.260770.0flower| hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G091000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597509.10.0auxin response factor 6 isoform X1
RefseqXP_006597510.10.0auxin response factor 6 isoform X3
RefseqXP_028203896.10.0auxin response factor 6-like isoform X1
RefseqXP_028203898.10.0auxin response factor 6-like isoform X3
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0R0FYA10.0A0A0R0FYA1_SOYBN; Auxin response factor
TrEMBLA0A445GRA20.0A0A445GRA2_GLYSO; Auxin response factor
TrEMBLK7MAG30.0K7MAG3_SOYBN; Auxin response factor
STRINGGLYMA15G09750.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]